SMART Protocols Ontology: Protocol Module

Title: SMART Protocols Ontology: Protocol Module
URI: http://purl.org/net/SMARTprotocol
Description: Smart PROTOCOL is an ontology designed to describe the minimum information to report a laboratory protocol.
License: Creative Commons CC-BY-NC-SA
Creation Date: 2013-07-01
Languages: en

The following evaluation results have been generated by the RESTFul web service provided by OOPS! (OntOlogy Pitfall Scanner!). OOPS! is a software on development, and we will be happy to receive your feedbak. If you notice any issue in the evaluation, please contact us at oops@delicias.dia.fi.upm.es.

It is obvious that not all the pitfalls are equally important; their impact in the ontology will depend on multiple factors. For this reason, each pitfall has an importance level attached indicating how important it is. We have identified three levels:

Critical: It is crucial to correct the pitfall. Otherwise, it could affect the ontology consistency, reasoning, applicability, etc.
Important: Though not critical for ontology function, it is important to correct this type of pitfall.
Minor: It is not really a problem, but by correcting it we will make the ontology nicer.

Evaluation results

P07. Merging different concepts in the same class3 cases detected. Minor

A class whose name refers to two or more different concepts is created.

This pitfall affects to the following ontology elements:

P08. Missing annotations86 cases detected. Minor

This pitfall consists in creating an ontology element and failing to provide human readable annotations attached to it. Consequently, ontology elements lack annotation properties that label them (e.g. rdfs:label, lemon:LexicalEntry, skos:prefLabel or skos:altLabel) or that define them (e.g. rdfs:comment or dc:description). This pitfall is related to the guidelines provided in [5].

This pitfall affects to the following ontology elements:

P11. Missing domain or range in properties3 cases detected. Important

Object and/or datatype properties without domain or range (or none of them) are included in the ontology.

This pitfall affects to the following ontology elements:

P13. Inverse relationships not explicitly declared4 cases detected. Minor

This pitfall appears when any relationship (except for those that are defined as symmetric properties using owl:SymmetricProperty) does not have an inverse relationship (owl:inverseOf) defined within the ontology.

This pitfall affects to the following ontology elements:

P22. Using different naming conventions in the ontology ontology *Minor

The ontology elements are not named following the same convention (for example CamelCase or use of delimiters as "-" or "_") . Some notions about naming conventions are provided in [2].

*This pitfall applies to the ontology in general instead of specific elements

References:

[1] Gómez-Pérez, A. Ontology Evaluation. Handbook on Ontologies. S. Staab and R. Studer Editors. Springer. International Handbooks on Information Systems. Pp: 251-274. 2004.
[2] Noy, N.F., McGuinness. D. L. Ontology development 101: A guide to creating your first ontology. Technical Report SMI-2001-0880, Standford Medical Informatics. 2001.
[3] Rector, A., Drummond, N., Horridge, M., Rogers, J., Knublauch, H., Stevens, R.,; Wang, H., Wroe, C. ''Owl pizzas: Practical experience of teaching owl-dl: Common errors and common patterns''. In Proc. of EKAW 2004, pp: 63–81. Springer. 2004.
[4] Hogan, A., Harth, A., Passant, A., Decker, S., Polleres, A. Weaving the Pedantic Web. Linked Data on the Web Workshop LDOW2010 at WWW2010 (2010).
[5] Archer, P., Goedertier, S., and Loutas, N. D7.1.3 – Study on persistent URIs, with identification of best practices and recommendations on the topic for the MSs and the EC. Deliverable. December 17, 2012.
[6] Heath, T., Bizer, C.: Linked data: Evolving the Web into a global data space (1st edition). Morgan & Claypool (2011).